|  Networks | 
In General > s.a. cellular automaton;
  complexity; graph.
  * Idea: Networks are finite
    non-empty set of objects called vertices, and a finite set of edges
    associated each with an unordered pair of vertices (its endpoints); A
    generalization of the concept of graph (they can have multiple edges).
  * Embedded in a manifold:
    A system of segments or edges which intersect only at their endpoints,
    called vertices; For example, the edges of a tessellation, which are also
    an embedded graph.
  * Applications: Cells, networks
    of chemicals linked by chemical reactions, the Internet or computer networks.
  @ General references:
    Buchanan 01,
      03 [I];
    Barabási 03;
    Watts 04;
    Newman et al 06;
    Newman PT(08)nov;
    Barthélemy PRP(11) [spatial networks];
    Newman 10;
    West & Grigolini 11 [r PT(11)nov];
    Bianconi EPL(15)-a1509 [physics challenges];
    Barabási 16.
  @ Applications, network science:
    Barabási 16,
    Menczer et al 20 [II/III].
  @ Complex networks: Albert & Barabási RMP(02)cm/01 [statistical mechanics];
    Evans CP(04) [rev];
    Boccaletti et al PRP(06) [dynamics];
    Bogacz et al PhyA(06) [homogeneous, Monte Carlo];
    Costa & Silva JSP(06) [hierarchical model];
    West et al PRP(08) [new concepts, information exchange];
    Radicchi et al PRL(08) [renormalization];
    Horak et al JSM(09)-a0811-in [persistent homology];
    Dorogovtsev 10;
    Macedo et al PLA(14)
      [optimal degree distribution, from Kaniadakis statistics];
    van der Hofstad 16
      (and author page);
    Mocnik sRep(18)
      [polynomial volume law and properties of Euclidean space].
  @ Quantum networks: Finkelstein et al qp/96 [of quantum points, and standard model];
    Törmä PRL(98)qp [transitions];
    Somma et al PRA(02) [simulating physical phenomena];
    Altman et al IJTP(04)qb.NC/03
    = IJTP(04) [superpositional];
    Chiribella et al PRA(09)-a0904 [theoretical framework];
    Novotný et al JPA(09) [random unitary dynamics];
    Allati et al PS(11) [communication via entangled coherent states];
    Bisio et al APS-a1601 [general framework];
    Perseguers et al RPP(13)-a1210 [entanglement distribution];
    Novotný et al PRA(15)-a1601 [random];
    Miller SPIE(18)-a1812,
    Aslmarand et al a1902
      [entangled, and information geometry];
    DiAdamo et al a2003 [QuNetSim software framework];
    Miguel-Ramiro et al a2005 [genuine quantum networks].
  @ Quantum networks, locality and localization:
    Törmä et al PRA(01)qp;
    Cardy CMP(05);
    Cavalcanti et al nComm(11)-a1010.
And Dynamical Systems > s.a. graphs and physics;
  quantum information.
  * Random network: If we start
    with a set of n vertices and add links between them at random, there
    are certain thresholds at which the resulting graph/network changes qualitatively
    [Erdős & Renyi]; One obtains first a disjoint union of trees of order 2,
    then of order 3 when m ~ n1/2
    and order 4 when m ~ n2/3,
    trees of higher orders, cycles when m ~ n/2; Until this point,
    there are many small components of order ~ ln n, then at m
    > n/2 there is a phase transition and a giant component of order
    n appears; The graph becomes connected when m
    ~ (n ln n)/2.
  @ Evolving: Krapivsky & Derrida PhyA(04) [growing, properties];
    Minnhagen et al PhyA(04) [merging and creation];
    Grönlund et al PS(05) [correlations and preferential growth];
    Shi et al mp/05;
    Shi et al PhyA(07) [clustering coefficients];
    Gu & Sun PLA(08) [with node addition and deletion];
    Hou et al in(09)-a0808 [degree-distribution stability of growing networks],
    a0901 [stable degree distribution];
    Britton & Lindholm JSP(10);
    Wang et al PLA(11) [discrete degree distribution];
    Aoki & Aoyagi PRL(12)
      [evolution of the nodes and links, scale-free];
    Cinardi et al a1902 [Network Geometry with Flavor].
  @ Transport, flows on networks:
    Jordan et al JMP(04) [fluctuations];
    Stinchcombe PhyA(05) [regular and disordered networks];
    Estrada et al PRP(12) [communicability];
    Toyota et al a1412 [effect of network topology].
  @ Critical phenomena: Goltsev et al PRE(03)cm/02 [phenomenological theory];
    Giuraniuc PRL(05)
    + pn(05)aug
      [interactions vs network structure];
    Dorogovtsev et al RMP(08)-a0705;
    > s.a. renormalization, {scale-free below}.
  @ Random network: Dorogovtsev & Samukhin PRE(03)cm/02 [fluctuations],
    et al NPB(03)cm/02 [statistical mechanics],
    cm/02,
    cm/02 [construction],
    cm/02-conf [overview],
    NPB(03)cm/02 [path lengths];
    Resendis-Antonio & Collado-Vides PhyA(04) [growth as diffusion];
    Luque & Ballesteros PhyA(04) [random walk networks];
    Franceschetti & Meester 07 [r JSP(09)];
    Nowotny & Requardt JCA(07)cm/06 [emergent properties];
    Ben-Naim & Krapivsky JPA(07) [addition-deletion];
    Novotný et al a0904 [random unitary quantum dynamics];
    Shang RPMP(11) [asymptotic link probabilities];
    Coon et al PRE(12)-a1112 [impact of boundaries];
    > s.a. non-extensive statistical mechanics [entropy];
      random tilings.
  @ Phase transitions: Derényi et al PhyA(04) [topological phase transition];
    Li et al PhyA(04) [transition to chaos];
    Kramer et al PRP(05) [and 2D quantum phase transitions];
    Wu et al PhyA(13) [emergence of clustering].
  @ Reaction networks: Baez a1306 [techniques from quantum field theory, master equation and coherent states].
  @ Related topics: Balachandran & Ercolessi IJMPA(92) [single-particle statistics];
    Golubitsky & Stewart BAMS(06) [grupoid formalism];
    La Mura & Swiatczak qp/07 [Markovian Entanglement Networks];
    Passerini & Severini in(11)-a0812 [entropy];
    Timme & Casadiego JPA(14) [revealing interaction topology from collective dynamics];
    > s.a. entanglement; spin models.
Neural Network
  > s.a. complexity; Machine Learning.
  * Idea: Computing systems
    that learn to perform tasks (machine learning) by considering examples and
    recognizing patterns and relationships in sets of data, generally without
    being programmed with task-specific rules.
  * Applications:
    Classification of galaxies and other astronomical objects
    (> see astronomy); > s.a.
    gravitational-wave
    interferometers; quantum mechanics.
  @ General references: Amit 89;
    Beale & Jackson 90;
    Biehl & Schwarze JPA(93);
    Dotsenko 95;
    Altaisky qp/01 [quantum];
    Deng et al a1701 [entanglement].
  @ And physics: 
    Sellier a1902
      [and the problem of finding the ground state of a quantum system];
    Schuld et al Phy(19) [and open quantum systems];
    D'Agnolo & Wulzer PRD(19),
    Carleo et al RMP(19)-a1903,
    Iten et al PRL(20)-a1807 [physics insight];
    Kohli a2001
      [Bianchi type A models, as continuous-time recurrent neural networks];
    Krippendorf & Syvaeri a2003 [detecting symmetries];
    Halverson et al a2008 [and effective field theory];
    Katsnelson & Vanchurin a2012 [emergent quantum behavior];
    Ban et al a2105 [quantum].
  > Online resources: see Wikipedia
    page.
Scale-Free Networks
  * Idea: Networks characterized by a
    power-law distribution in the number of connections (degree) each node has; The network
    continually grows by the addition of new nodes; A new node connects to two existing nodes
    in the network at time t + 1; This new node is much more likely to connect to
    highly connected nodes (preferential attachment); The function P(k)
    does not have a peak and decays as a power law at large k, so most nodes have
    one or two links, but a few nodes (hubs) have a large number of links, which guarantees
    that the system is fully connected.
  $ Def: A network in which the
    probability that any given vertex is of degree k is Prob[d(v)
    = k] = kγ, where
    often γ ∈ [1,3].
  @ References: Dorogovtsev et al PRE(02) [properties];
    Barabási & Bonabeau SA(03)may;
    Dangalchev PhyA(04) [stochastic models];
    Chen & Shi PhyA(04) [modeling];
    Shiner & Davison CSF(04) [connectivity];
    Rodgers et al JPA(05) [eigenvalue spectrum of adjacency matrix];
    Del Genio et al PRL(11)
    + Sinha Phy(11) [they must be sparse].
Other Concepts and Types
  > s.a. cell complex; Elastic Networks;
  graph types; tensor networks;
  tilings.
  * Network connectivity: Can
    be characterized by the probability P(k) that a node has
  k links.
  * Random: (Erdős-Renyi)
    Each pair of nodes is connected with probability p; The function
    P(k) is highly peaked at some k, and decays
    exponentially at large k, so most nodes have approximately the
    same number of links; (Uniform random graph) Pick one uniformly at random;
    These types of random graphs do not reproduce well the observed properties
    of real-world networks, which are sparse, have small diameters (small-world
    phenomenon), become denser with time, have an inverse-power-law distribution
    of vertex degrees with hubs and clusters/cliques; The reason is that random
    graphs are too independent, and models with correlations should be used.
  * May-Wigner stability theorem:
    Increasing the complexity of a network inevitably leads to its destabilization,
    such that a small perturbation will be able to disrupt the entire system.
  @ Random cellular networks:
    Vincze et al JGP(04) [Aboav-Weaire law].
  @ Small-world networks: Watts 99;
    Araújo et al PLA(03);
    Sinha PhyA(05) [complexity vs stability];
    Cont & Tanimura AAP(08).
  @ Causal networks: (a.k.a. Bayesian networks) Ito & Sagawa PRL(13) [non-equilibrium thermodynamics of complex information flows and the second law];
    > s.a. generalized bell inequalities.
  @ Other types: 
    Holme & Saramäki PRP(12) [temporal networks];
    Bartolucci & Annibale JPA(14) [associative networks, with diluted patterns];
    Boguñá et al NJP(14) [cosmological networks];
    Baez & Pollard AMP(18)-a1704 [open reaction networks, as morphisms in a category].
  @ Related topics: Kim PRL(04)cm [coarse-graining];
    Gelenbe PRS(08) [intro to stochastic networks];
    Fortunato PRP(10) [clustering];
    Motoike & Takigawa-Imamura PRE(10)
      [branching structure growth, effect of signal propagation];
    Thyagu & Mehta PhyA(11) [competitive cluster growth].
  > Related topics: see Causal Model;
    correlations; discrete geometry [models
    of spacetime]; entanglement entropy; technology [internet].
  > In different areas of physics: see electricity
    [resistor networks]; topological defects [cosmic-string networks, etc].
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